Publications (62) José Manuel Gómez Vilar publications

2024

  1. The unreasonable effectiveness of equilibrium gene regulation through the cell cycle

    Cell Systems, Vol. 15, Núm. 7, pp. 639-648.e2

2023

  1. Dynamics-informed deconvolutional neural networks for super-resolution identification of regime changes in epidemiological time series

    Science advances, Vol. 9, Núm. 28, pp. eadf0673

  2. Multi-landmark alignment of genomic signals reveals conserved expression patterns across transcription start sites

    Scientific reports, Vol. 13, Núm. 1, pp. 10835

2022

  1. Robustness of DNA looping across multiple cell divisions in individual bacteria

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 119, Núm. 33

2021

  1. All-or-none amyloid disassembly via chaperone-triggered fibril unzipping favors clearance of α-synuclein toxic species

    Proceedings of the National Academy of Sciences of the United States of America, Vol. 118, Núm. 36

  2. Ascertaining the initiation of epidemic resurgences: An application to the COVID-19 second surges in Europe and the Northeast United States

    Royal Society Open Science, Vol. 8, Núm. 10

  3. Reliably quantifying the evolving worldwide dynamic state of the COVID-19 outbreak from death records, clinical parametrization, and demographic data

    Scientific Reports, Vol. 11, Núm. 1

2020

  1. Extraction and Refolding Determinants of Chaperone-Driven Aggregated Protein Reactivation

    Journal of Molecular Biology, Vol. 432, Núm. 10, pp. 3239-3250

2018

  1. Clearly Detectable, Kinetically Restricted Solid-Solid Phase Transition in cis-Ceramide Monolayers

    Langmuir, Vol. 34, Núm. 39, pp. 11749-11758

  2. Determinants of population responses to environmental fluctuations

    Scientific Reports, Vol. 8, Núm. 1

2017

  1. Computing at the Front-End by Receptor Networks

    Cell Systems

2014

  1. Communication: System-size scaling of Boltzmann and alternate Gibbs entropies

    Journal of Chemical Physics, Vol. 140, Núm. 20

  2. Entropy of leukemia on multidimensional morphological and molecular landscapes

    Physical Review X, Vol. 4, Núm. 2

  3. Suppression and enhancement of transcriptional noise by DNA looping

    Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, Vol. 89, Núm. 6

2013

  1. Critical assessment of automated flow cytometry data analysis techniques

    Nature Methods, Vol. 10, Núm. 3, pp. 228-238

  2. Reliable prediction of complex phenotypes from a modular design in free energy space: An extensive exploration of the lac operon

    ACS Synthetic Biology, Vol. 2, Núm. 10, pp. 576-586

  3. Systems biophysics of gene expression

    Biophysical Journal, Vol. 104, Núm. 12, pp. 2574-2585

2012

  1. Far-from-equilibrium processes without net thermal exchange via energy sorting

    Journal of Chemical Physics

2011

  1. Control of gene expression by modulated self-assembly

    Nucleic Acids Research, Vol. 39, Núm. 16, pp. 6854-6863

  2. Optimal resting-growth strategies of microbial populations in fluctuating environments

    PLoS ONE, Vol. 6, Núm. 4